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Neuropixels Configuration

The Neuropixels Signal Chain

The Neuropixels workflow begins with the probe itself — a silicon electrode array implanted into the subject's brain — which connects via an IMEC-supplied cable to a small headstage (version-specific for 1.0 vs. 2.0 probes) that sits close to the animal and handles initial signal conditioning. The headstage and cable feed into one of two data acquisition hardware options: a PXIe system, consisting of an IMEC acquisition card housed in a PXIe chassis, that connects to the recording computer via a PCIe card, or a OneBox, a standalone desktop unit that serves the same acquisition function in a more compact form. All Neuropixels probes must be used with either the PXIe acquisition module or the OneBox. These hardware systems interface with one of two software options: SpikeGLX, developed at Janelia Research Campus, or Open Ephys, an open-source plugin-based application developed at MIT. Both use the same underlying API to communicate with the probes, so their core data acquisition is equivalent, though they differ in their graphical display, probe configuration interface, online processing options, and saved file formats. In short, the chain runs: probe → headstage → cable → data acquisition hardware (OneBox or PXIe card) → acquisition software (SpikeGLX or Open Ephys) → recorded data on the computer. Use the tabs above to explore each component in the signal chain in more detail.

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